Xanthomonas oryzae strain X11-5A

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Xanthomonas

Description

Xanthomonas oryzae strain X11-5A is a Gram-negative, rod-shaped bacterium that is an aerobic organism. It is mobile, possessing flagella that facilitate its movement. This strain is mesophilic, thriving within a temperature range conducive to growth in typical environmental conditions. X11-5A has a single replicon and features a double membrane structure. This bacterium is primarily associated with the host plant Oryza sativa, commonly known as rice, where it exhibits a free-living biotic relationship. Notably, Xanthomonas oryzae is responsible for causing bacterial leaf blight, a significant disease that adversely affects rice crops. The presence of this pathogen can lead to substantial yield losses, making it an important target for agricultural management and research. The strain is cataloged under the accession number LHUJ00000000.1, which provides a reference for further study and data analysis. Understanding the traits of Xanthomonas oryzae strain X11-5A can help inform strategies for disease control and management in rice cultivation, highlighting the critical intersection of microbiology and agriculture in combating plant diseases.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusXanthomonas
SpeciesXanthomonas oryzae
Strainstrain X11-5A

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Xanthomonas oryzae strain X11-5A
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Oryza sativa
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Xanthomonas oryzae strain X11-5A contig_391, whole genome shotgun

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

Not Available

Non-Coding Genes

Not Available

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
acriflavin resistance proteinADT25_00920P25197Negative197083 - 200592124842.0
hemolysin dADT25_00925Q8G2M7Negative200589 - 20172239814.8
cytochrome cADT25_00930Not AvailablePositive201926 - 20231813523.1
cytochrome c biogenesis protein ccsaADT25_00935P82903Positive202327 - 20278815599.2
Trna-alaNot AvailableNot AvailablePositive202881 - 202956Not Available
Trna-gluNot AvailableNot AvailablePositive203004 - 203079Not Available
hypothetical proteinADT25_00950Not AvailableNegative203294 - 2035548983.58
Trna-alaNot AvailableNot AvailablePositive203839 - 203914Not Available
Trna-gluNot AvailableNot AvailablePositive203962 - 204037Not Available
transposaseADT25_00965Not AvailableNegative204105 - 20444812758.2

Displaying genes 371 – 380 of 4268 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Bacteria leaf blightCausesPMC10512380

Displaying health effects 1 – 1 of 1 in total