Vibrio xuii strain DSM 17185

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio xuii strain DSM 17185 is a marine bacterium primarily found in the Sopapey waters. It is characterized by having a single replicon, which indicates a streamlined genomic structure that can be advantageous for adaptation in its aquatic environment. This strain is known to interact with specific hosts, particularly members of the phylum Mollusca and the shrimp species Penaeus vannamei. The ecological role of Vibrio xuii in its habitat may be significant, as members of the Vibrio genus are often associated with the marine ecosystem's dynamics, influencing both the health of aquatic organisms and the overall microbiome of their environments. Its association with Penaeus vannamei, a commercially important shrimp species, suggests a potential impact on aquaculture practices and the health management of these crustaceans. The strain is cataloged under the accession number LHPK00000000.1, providing a reference for researchers interested in studying its genomic and functional characteristics. Understanding Vibrio xuii strain DSM 17185's interactions with mollusks and shrimp can shed light on its ecological importance and its potential roles in marine food webs, as well as its implications for shrimp farming and the health of marine ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio xuii
Strainstrain DSM 17185

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio xuii strain DSM 17185
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatSopapey waters
Biotic relationshipNot Available
Host(s)Mollusca, Penaeus vannamei
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio xuii strain DSM 17185 contig3243, whole genome shotgun

Gene Summary

Adenine Count

1740982 bp

Thymine Count

1742131 bp

Guanine Count

1413626 bp

Cytosine Count

1401160 bp

Genome Length

6297899 bp

Protein-coding Genes

6561 genes

Non-Coding Genes

101 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
mechanosensitive ion channel protein mscsAKJ18_16365Not AvailablePositive3651175 - 365227541463.9
mfs transporterAKJ18_16370Not AvailableNegative3652307 - 365355445706.9
beta-lactamaseAKJ18_16375Not AvailableNegative3653696 - 365485643463.9
tetr family transcriptional regulatorAKJ18_16380Not AvailablePositive3654967 - 365557523052.8
calcium-binding proteinAKJ18_16385Not AvailableNegative3655621 - 3668307446238.0
hypothetical proteinAKJ18_16390Not AvailableNegative3668751 - 366906511668.0
phospho-2-dehydro-3-deoxyheptonate aldolaseAKJ18_16395Not AvailableNegative3669183 - 367023838522.8
glutamine abc transporter atp-binding proteinAKJ18_16400Not AvailablePositive3670548 - 367126426357.9
polar amino acid abc transporter permeaseAKJ18_16405Not AvailablePositive3671271 - 367206229297.1
amino acid abc transporter substrate-binding proteinAKJ18_16410Not AvailablePositive3672074 - 367291330870.7

Displaying genes 3241 – 3250 of 6662 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.