Vibrio xuii strain DSM 17185

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio xuii strain DSM 17185 is a marine bacterium primarily found in the Sopapey waters. It is characterized by having a single replicon, which indicates a streamlined genomic structure that can be advantageous for adaptation in its aquatic environment. This strain is known to interact with specific hosts, particularly members of the phylum Mollusca and the shrimp species Penaeus vannamei. The ecological role of Vibrio xuii in its habitat may be significant, as members of the Vibrio genus are often associated with the marine ecosystem's dynamics, influencing both the health of aquatic organisms and the overall microbiome of their environments. Its association with Penaeus vannamei, a commercially important shrimp species, suggests a potential impact on aquaculture practices and the health management of these crustaceans. The strain is cataloged under the accession number LHPK00000000.1, providing a reference for researchers interested in studying its genomic and functional characteristics. Understanding Vibrio xuii strain DSM 17185's interactions with mollusks and shrimp can shed light on its ecological importance and its potential roles in marine food webs, as well as its implications for shrimp farming and the health of marine ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio xuii
Strainstrain DSM 17185

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio xuii strain DSM 17185
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatSopapey waters
Biotic relationshipNot Available
Host(s)Mollusca, Penaeus vannamei
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio xuii strain DSM 17185 contig3243, whole genome shotgun

Gene Summary

Adenine Count

1740982 bp

Thymine Count

1742131 bp

Guanine Count

1413626 bp

Cytosine Count

1401160 bp

Genome Length

6297899 bp

Protein-coding Genes

6561 genes

Non-Coding Genes

101 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
cobalamin 5'-phosphate synthaseAKJ18_15315Not AvailableNegative3415230 - 341574519795.5
iron-sulfur cluster assembly proteinAKJ18_15320Not AvailableNegative3415806 - 341612911677.8
scaffolding proteinAKJ18_15325Not AvailableNegative3416193 - 341657613594.2
cysteine desulfuraseAKJ18_15330Not AvailableNegative3416624 - 341783845111.0
rrf2 family transcriptional regulatorAKJ18_15335Not AvailableNegative3417867 - 341837318065.5
trna (cytidine/uridine-2'-o-)-methyltransferaseAKJ18_15340Not AvailableNegative3418488 - 341921926995.3
inositol monophosphataseAKJ18_15345Not AvailablePositive3419398 - 342020129156.0
Trna-trpNot AvailableNot AvailablePositive3420669 - 3420745Not Available
Trna-aspNot AvailableNot AvailablePositive3420818 - 3420894Not Available
Trna-trpNot AvailableNot AvailablePositive3420958 - 3421034Not Available

Displaying genes 3031 – 3040 of 6662 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.