Vibrio xuii strain DSM 17185

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio xuii strain DSM 17185 is a marine bacterium primarily found in the Sopapey waters. It is characterized by having a single replicon, which indicates a streamlined genomic structure that can be advantageous for adaptation in its aquatic environment. This strain is known to interact with specific hosts, particularly members of the phylum Mollusca and the shrimp species Penaeus vannamei. The ecological role of Vibrio xuii in its habitat may be significant, as members of the Vibrio genus are often associated with the marine ecosystem's dynamics, influencing both the health of aquatic organisms and the overall microbiome of their environments. Its association with Penaeus vannamei, a commercially important shrimp species, suggests a potential impact on aquaculture practices and the health management of these crustaceans. The strain is cataloged under the accession number LHPK00000000.1, providing a reference for researchers interested in studying its genomic and functional characteristics. Understanding Vibrio xuii strain DSM 17185's interactions with mollusks and shrimp can shed light on its ecological importance and its potential roles in marine food webs, as well as its implications for shrimp farming and the health of marine ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio xuii
Strainstrain DSM 17185

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio xuii strain DSM 17185
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatSopapey waters
Biotic relationshipNot Available
Host(s)Mollusca, Penaeus vannamei
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio xuii strain DSM 17185 contig3243, whole genome shotgun

Gene Summary

Adenine Count

1740982 bp

Thymine Count

1742131 bp

Guanine Count

1413626 bp

Cytosine Count

1401160 bp

Genome Length

6297899 bp

Protein-coding Genes

6561 genes

Non-Coding Genes

101 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
exodeoxyribonuclease v subunit alphaAKJ18_14865Not AvailableNegative3304770 - 330689378147.1
exodeoxyribonuclease v subunit betaAKJ18_14870Not AvailableNegative3306893 - 3310510135086.0
exonuclease v subunit gammaAKJ18_14875Not AvailableNegative3310808 - 3314272131607.0
c4-dicarboxylate abc transporterAKJ18_14880Not AvailableNegative3314367 - 331533534650.2
xre family transcriptional regulatorAKJ18_14885Not AvailablePositive3315439 - 331633233537.3
multidrug dmt transporter permeaseAKJ18_14890Not AvailablePositive3316435 - 331673711199.3
copper homeostasis protein cutcAKJ18_14895Not AvailablePositive3316883 - 331762626437.7
lysr family transcriptional regulatorAKJ18_14900Not AvailablePositive3317669 - 331861635684.0
hypothetical proteinAKJ18_14905Not AvailablePositive3318910 - 332012745059.3
hypothetical proteinAKJ18_14910Not AvailablePositive3320173 - 332081424480.1

Displaying genes 2941 – 2950 of 6662 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.