Vibrio nereis strain DSM 19584

aerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio nereis strain DSM 19584 is an aerobic bacterium characterized by its single replicon. This strain is cataloged under the accession number LHPJ00000000.1, which serves as its unique identifier in genomic databases. As an aerobic organism, Vibrio nereis strain DSM 19584 requires oxygen for its metabolic processes, which positions it within environments where oxygen is readily available. This aerobe can be found in various aquatic habitats, potentially contributing to the cycling of nutrients and organic matter in marine ecosystems. The presence of a single replicon indicates a streamlined genomic structure, which may influence its adaptability and efficiency in utilizing available resources in its environment. Understanding the genomic makeup can provide insights into its metabolic pathways and ecological roles. In summary, Vibrio nereis strain DSM 19584 exemplifies an aerobic lifestyle with a single replicon, highlighting its adaptation to oxygen-rich environments. Its ecological role in marine systems may involve interactions that contribute to the overall health and stability of these ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio nereis
Strainstrain DSM 19584

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio nereis strain DSM 19584
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio nereis strain DSM 19584 contig0080, whole genome shotgun

Gene Summary

Adenine Count

1118358 bp

Thymine Count

1116793 bp

Guanine Count

932533 bp

Cytosine Count

928946 bp

Genome Length

4096630 bp

Protein-coding Genes

3662 genes

Non-Coding Genes

87 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
gtpaseAKJ17_12080P0ADK5Negative2703703 - 270408915076.0
diguanylate cyclaseAKJ17_12085Q3Z1N3Negative2704254 - 270583460065.8
hypothetical proteinAKJ17_12090Not AvailableNegative2705815 - 270729956668.3
lactate dehydrogenaseAKJ17_12095Not AvailableNegative2707422 - 270889156103.7
purine nucleoside phosphorylaseAKJ17_12100Q87G42Negative2708952 - 270966225584.8
hypothetical proteinAKJ17_12105P24252Positive2710005 - 271095536456.0
merr family transcriptional regulatorAKJ17_12110P75989Positive2710945 - 271174230138.1
deoxyribodipyrimidine photolyaseAKJ17_12115Q9KNA8Positive2711745 - 271317254800.1
peptidaseAKJ17_12120P75954Positive2713162 - 271406133118.1
hypothetical proteinAKJ17_12125Not AvailableNegative2714133 - 27143818706.12

Displaying genes 2391 – 2400 of 3749 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

210 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00005275-oxopentanoateC5H7O3Chemical structure of 5-oxopentanoateNot available
Average115.109Da
Monoisotopic115.040067665Da
BASm0000642S-adenosyl-4-methylsulfanyl-2-oxobutanoateC15H19N5O6SChemical structure of S-adenosyl-4-methylsulfanyl-2-oxobutanoateNot available
Average397.406Da
Monoisotopic397.105604055Da
BASm0000719chloramphenicol 3-acetateC13H14Cl2N2O6Chemical structure of chloramphenicol 3-acetateNot available
Average365.16Da
Monoisotopic364.0228916Da

Displaying 1–10 of 210 metabolites

Health Effects

No health effects information available for this bacterium.