Vibrio nereis strain DSM 19584

aerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio nereis strain DSM 19584 is an aerobic bacterium characterized by its single replicon. This strain is cataloged under the accession number LHPJ00000000.1, which serves as its unique identifier in genomic databases. As an aerobic organism, Vibrio nereis strain DSM 19584 requires oxygen for its metabolic processes, which positions it within environments where oxygen is readily available. This aerobe can be found in various aquatic habitats, potentially contributing to the cycling of nutrients and organic matter in marine ecosystems. The presence of a single replicon indicates a streamlined genomic structure, which may influence its adaptability and efficiency in utilizing available resources in its environment. Understanding the genomic makeup can provide insights into its metabolic pathways and ecological roles. In summary, Vibrio nereis strain DSM 19584 exemplifies an aerobic lifestyle with a single replicon, highlighting its adaptation to oxygen-rich environments. Its ecological role in marine systems may involve interactions that contribute to the overall health and stability of these ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio nereis
Strainstrain DSM 19584

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio nereis strain DSM 19584
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio nereis strain DSM 19584 contig0080, whole genome shotgun

Gene Summary

Adenine Count

1118358 bp

Thymine Count

1116793 bp

Guanine Count

932533 bp

Cytosine Count

928946 bp

Genome Length

4096630 bp

Protein-coding Genes

3662 genes

Non-Coding Genes

87 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ribonucleotide-diphosphate reductase subunit alphaAKJ17_09200P43754Positive2037845 - 204012785590.5
ribonucleotide-diphosphate reductase subunit betaAKJ17_09205P69925Positive2040213 - 204134643716.7
(fe-s)-binding proteinAKJ17_09210Not AvailablePositive2041346 - 204162410117.1
30s ribosomal protein s6 modification proteinAKJ17_09215Not AvailableNegative2041669 - 20419329564.31
damage-inducible protein cinaAKJ17_09220A8G1B1Negative2042137 - 204339645795.7
ubiquitin--protein ligaseAKJ17_09225Not AvailablePositive2043566 - 204446233420.8
transcriptional regulatorAKJ17_09230Not AvailablePositive2044654 - 204516618502.9
carboxynorspermidine decarboxylaseAKJ17_09235Q56575Negative2045221 - 204635442017.8
saccharopine dehydrogenaseAKJ17_09240P0DPE4Negative2046462 - 204770645936.6
aminotransferase class iiiAKJ17_09245Q9Z3R2Negative2047722 - 2050610104883.0

Displaying genes 1821 – 1830 of 3749 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

210 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00005275-oxopentanoateC5H7O3Chemical structure of 5-oxopentanoateNot available
Average115.109Da
Monoisotopic115.040067665Da
BASm0000642S-adenosyl-4-methylsulfanyl-2-oxobutanoateC15H19N5O6SChemical structure of S-adenosyl-4-methylsulfanyl-2-oxobutanoateNot available
Average397.406Da
Monoisotopic397.105604055Da
BASm0000719chloramphenicol 3-acetateC13H14Cl2N2O6Chemical structure of chloramphenicol 3-acetateNot available
Average365.16Da
Monoisotopic364.0228916Da

Displaying 1–10 of 210 metabolites

Health Effects

No health effects information available for this bacterium.