Pararhizobium polonicum strain F5.1

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Pararhizobium

Description

Pararhizobium polonicum strain F5.1 is a bacterium characterized by having four replicons, which are essential for its genetic organization and functionality. The strain is associated with multiple accessions, specifically LGLV00000000.1, NZ_CM004502.1, NZ_CM004504.1, and NZ_CM004503.1. These accessions provide genomic data that can be utilized for further studies on its genetic makeup and potential applications in various fields. Pararhizobium polonicum is known for its role in nitrogen fixation, which is crucial for soil fertility and plant growth. The presence of multiple replicons can be indicative of a complex genetic architecture that may facilitate adaptation to different environmental conditions. This genetic diversity might enhance the strain's ability to form symbiotic relationships with various plant species, thus contributing to ecosystem stability and productivity. Understanding the genomic characteristics of Pararhizobium polonicum strain F5.1, particularly its multi-replicon structure, could provide insights into its ecological roles and its potential use in sustainable agricultural practices. By promoting nitrogen fixation, this strain could play a significant role in reducing the need for chemical fertilizers, thus supporting environmentally friendly farming approaches.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusPararhizobium
SpeciesPararhizobium polonicum
Strainstrain F5.1

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pararhizobium polonicum strain F5.1 plasmid pF5.1b, whole genome

Gene Summary

Adenine Count

29554 bp

Thymine Count

29116 bp

Guanine Count

42664 bp

Cytosine Count

42158 bp

Genome Length

143492 bp

Protein-coding Genes

135 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
3-oxoacyl-acp synthaseADU59_02085Q7CTU0Negative433868 - 43485734168.1
adenosylmethionine-8-amino-7-oxononanoate aminotransferaseADU59_02090Q31SA6Negative434854 - 43611945677.6
dethiobiotin synthetaseADU59_02095Q8U8T9Negative436116 - 43675122904.2
8-amino-7-oxononanoate synthaseADU59_02100A2SD53Negative436748 - 43789340440.4
biotin synthaseADU59_02105A9CFX5Negative437890 - 43889436148.6
gntr family transcriptional regulatorADU59_02110Not AvailableNegative439114 - 43978224625.2
phosphomethylpyrimidine synthaseADU59_02115Q8UCC9Positive440161 - 44199667219.2
glycine oxidaseADU59_02120O34292Positive441999 - 44305437602.2
thiamine biosynthesis protein thisADU59_02125Not AvailablePositive443051 - 4432487298.52
thiazole synthaseADU59_02130B9JMX8Positive443251 - 44402426898.7

Displaying genes 771 – 780 of 6067 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

8 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0002051D-fructoseC6H12O6Chemical structure of D-fructose57-48-7
Average180.1559Da
Monoisotopic180.0633881Da
BASm0003333(2R)-3-phosphoglycerateC3H4O7PChemical structure of (2R)-3-phosphoglycerateNot available
Average183.033Da
Monoisotopic182.9711102Da
BASm0003346(2R)-2-phosphoglycerateC3H4O7PChemical structure of (2R)-2-phosphoglycerateNot available
Average183.033Da
Monoisotopic182.9711102Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm0007704N-acetyl-L-methionine sulfoneC7H12NO5SChemical structure of N-acetyl-L-methionine sulfoneNot available
Average222.24Da
Monoisotopic222.0441672Da
BASm0007705L-methionine sulfoximineC5H12N2O3SChemical structure of L-methionine sulfoximineNot available
Average180.22Da
Monoisotopic180.0568634Da
BASm0007706N-acetyl-L-methionine sulfoximineC7H13N2O4SChemical structure of N-acetyl-L-methionine sulfoximineNot available
Average221.25Da
Monoisotopic221.060151661Da

Displaying 1–8 of 8 metabolites

Health Effects

No health effects information available for this bacterium.