Pseudomonas syringae pv. cilantro strain 0788_9

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas syringae pv. cilantro strain 0788_9 is a Gram-negative, rod-shaped bacterium that exhibits mobility due to the presence of flagella. This strain is classified as a heterotrophic aerobe, which means it requires oxygen for its growth and derives its energy from organic compounds. It thrives in various habitats and has a mesophilic temperature range, indicating optimal growth at moderate temperatures. This bacterium is known for its pathogenicity, primarily affecting a wide range of plant hosts, including important crops such as Solanum lycopersicum (tomato), Oryza sativa (rice), and Arabidopsis thaliana (a model organism in plant biology). The biotic relationship of P. syringae pv. cilantro is free-living, yet it can induce significant health effects on plants, causing diseases such as blight, chlorosis, necrosis, bacterial canker, and foliar necroses and cankers. With a single replicon and two membranes, this bacterium's cellular structure is consistent with many other members of the Pseudomonas genus. Its ability to infect numerous plant species highlights its ecological versatility and potential impact on agricultural systems. Understanding the pathogenic mechanisms of P. syringae pv. cilantro strain 0788_9 is crucial for developing management strategies to mitigate the diseases it causes, thereby protecting crop health and agricultural productivity.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas syringae
Strainpv. cilantro strain 0788_9

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Pseudomonas syringae pv. cilantro strain 0788_9
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Homo sapiens, Metazoa, Viridiplantae
Cell arrangementSingles
SporulationNot Available
Energy sourceHeterotroph
PathogenicityPlant

Genome Summary

Pseudomonas syringae pv. cilantro strain 0788_9

Gene Summary

Adenine Count

1194266 bp

Thymine Count

1200548 bp

Guanine Count

1691002 bp

Cytosine Count

1685739 bp

Genome Length

5923202 bp

Protein-coding Genes

5201 genes

Non-Coding Genes

88 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Glycoside hydrolase family 19 proteinABJ99_4538O64203Negative2380665 - 238121019604.6
AttlNot AvailableNot AvailablePositive2380783 - 2380794Not Available
tail fiber assembly domain proteinABJ99_4539Not AvailableNegative2381271 - 238154910440.6
Tail fiber proteinABJ99_4540Not AvailableNegative2381907 - 238307039779.4
Tail tip fiber protein gp19ABJ99_4541P03749Negative2384065 - 2387757132398.0
Tail assembly proteinABJ99_4542O64334Negative2387962 - 238854920327.4
Phage tail assembly proteinABJ99_4543Not AvailableNegative2388546 - 238932829153.4
Minor tail protein lABJ99_4544O64332Negative2389331 - 239002925845.6
Minor tail protein mABJ99_4545Not AvailableNegative2390066 - 239041012494.3
Tail tape measure proteinABJ99_4546P85501Negative2390410 - 2394498141934.0

Displaying genes 21 – 30 of 5289 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

319 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da

Displaying 1–10 of 319 metabolites

Health Effects

Health ConditionRelationReference
ChlorosisCausesPMC3202874
NecrosisCausesPMC3202874
Foliar necroses and cankersCausesPMC6638699
Bacterial cankerCausesPMC8815115
BlightCausesPMC12030312
Plant diseasesCausesPMC3029378
Bacterial cankerCausesPMC4803819
Cherry cankerCausesPMC9305585

Displaying health effects 1 – 8 of 8 in total