Herpetosiphon geysericola strain DSM 7119

Gram-negativeFilamentousaerobic

Kingdom

Bacillati

Phylum

Chloroflexota

Class

Chloroflexia

Order

Herpetosiphonales

Family

Herpetosiphonaceae

Genus

Herpetosiphon

Description

Herpetosiphon geysericola strain DSM 7119 is a Gram-negative, filamentous bacterium that requires oxygen for growth, classifying it as aerobic. This strain is characterized by the presence of flagella, which contribute to its motility. It has a single replicon, indicating a streamlined genomic structure. The strain is cataloged with the accession number LGKP00000000.1, which provides a reference for genetic and genomic studies. Being filamentous in shape, H. geysericola may play important roles in its ecological niche, particularly in the environments where it is found. Biologically, filamentous bacteria like H. geysericola can contribute to the formation of microbial mats and biofilms, serving as key players in nutrient cycling and ecosystem dynamics. Their aerobic nature suggests they may thrive in oxygen-rich environments, potentially influencing microbial community structure and function in such habitats. Understanding the traits of H. geysericola can enhance our knowledge of microbial diversity and its ecological implications in various ecosystems.

Taxonomy

KingdomBacillati
PhylumChloroflexota
ClassChloroflexia
OrderHerpetosiphonales
FamilyHerpetosiphonaceae
GenusHerpetosiphon
SpeciesHerpetosiphon geysericola
Strainstrain DSM 7119

Profile

Physiology
Gram staining propertiesNegative
ShapeFilamentous
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Herpetosiphon geysericola strain DSM 7119 contig_18, whole genome

Gene Summary

Adenine Count

1495696 bp

Thymine Count

1528570 bp

Guanine Count

1573841 bp

Cytosine Count

1542305 bp

Genome Length

6140412 bp

Protein-coding Genes

4688 genes

Non-Coding Genes

53 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
atp synthase f0f1 subunit epsilonSE18_11510A9AVV5Negative2721844 - 272225715211.3
atp f0f1 synthase subunit betaSE18_11515A9AVV4Negative2722349 - 272376450911.8
atp f0f1 synthase subunit gammaSE18_11520A9AVV3Negative2723809 - 272469632319.0
atp f0f1 synthase subunit alphaSE18_11525A9AVV2Negative2724779 - 272633255563.9
atp f0f1 synthase subunit bSE18_11535A9AVV0Negative2726748 - 272724218473.2
atp synthase subunit cSE18_11540A9WGS9Negative2727336 - 27275697839.89
hypothetical proteinSE18_11545A4J9A5Negative2727655 - 272863534961.0
hypothetical proteinSE18_11550Not AvailablePositive2728769 - 27290028537.49
atpaseSE18_11555P22998Positive2729700 - 273150865193.6
dna methyltransferaseSE18_11560P14751Negative2731906 - 273275132144.0

Displaying genes 2061 – 2070 of 4741 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

237 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000344(2R,3S)-homoisocitrateC7H7O7Chemical structure of (2R,3S)-homoisocitrateNot available
Average203.128Da
Monoisotopic203.020823305Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm00005275-oxopentanoateC5H7O3Chemical structure of 5-oxopentanoateNot available
Average115.109Da
Monoisotopic115.040067665Da
BASm0000542HgHgChemical structure of HgNot available
Average200.59Da
Monoisotopic201.9706256Da
BASm00007164-methylsulfanyl-2-oxobutanoateC5H7O3SChemical structure of 4-methylsulfanyl-2-oxobutanoateNot available
Average147.17Da
Monoisotopic147.012138839Da

Displaying 1–10 of 237 metabolites

Health Effects

No health effects information available for this bacterium.