Pseudomonas sp. RIT-PI-a

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. RIT-PI-a is characterized by having a single replicon, which indicates a streamlined genomic organization. This trait may contribute to its adaptability and efficiency in various environments. The organism is cataloged under the accession number LGIR00000000.1, which serves as a reference for its genetic data in scientific databases. The ecological significance of Pseudomonas species is well-documented, often highlighting their roles in nutrient cycling and bioremediation. Pseudomonas sp. RIT-PI-a, in particular, may possess traits that enable it to thrive in diverse habitats, potentially leading to interactions with other microorganisms and contributing to ecological balance. The presence of a single replicon could suggest a specialization in its metabolic pathways, which might enhance its survival and functional capabilities in specific niches. In summary, Pseudomonas sp. RIT-PI-a is distinguished by its single replicon, as noted in its genetic accession. This trait may reflect its ecological adaptations and roles within microbial communities. Understanding such traits can provide insights into the organism's potential applications in environmental management and biotechnology, emphasizing the importance of studying microbial diversity and function in various ecological contexts.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. RIT-PI-a
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. RIT-PI-a
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sp. RIT-PI-a NODE_20_length_47495_cov_25.207_ID_39,

Gene Summary

Adenine Count

888840 bp

Thymine Count

894504 bp

Guanine Count

1480755 bp

Cytosine Count

1468758 bp

Genome Length

4732857 bp

Protein-coding Genes

4045 genes

Non-Coding Genes

103 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
xre family transcriptional regulatorAC788_00535Q48N77Positive133159 - 13386625821.1
competence protein tfoxAC788_00540Not AvailableNegative134088 - 13436010024.2
hypothetical proteinAC788_00545Not AvailableNegative134486 - 13603056787.6
penicillin-binding proteinAC788_00550Q9KUC0Positive136150 - 13847484766.6
lipoproteinAC788_00555Not AvailablePositive138490 - 13926926459.1
pseudouridine synthaseAC788_00560Q57152Positive139269 - 13959812593.2
glycosyltransferaseAC788_00565Not AvailableNegative139603 - 14003716087.2
acetolactate synthase 3 catalytic subunitAC788_00570P00893Positive140433 - 14215762529.0
acetolactate synthase 3 regulatory subunitAC788_00575P21622Positive142160 - 14265117831.6
ketol-acid reductoisomeraseAC788_00580Q4K608Positive142699 - 14371536341.4

Displaying genes 161 – 170 of 4148 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

296 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da

Displaying 1–10 of 296 metabolites

Health Effects

No health effects information available for this bacterium.