Saccharothrix sp. NRRL B-16348

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Pseudonocardiales

Family

Pseudonocardiaceae

Genus

Saccharothrix

Description

Saccharothrix sp. NRRL B-16348 is a bacterial strain characterized by possessing a single replicon, which indicates a streamlined genomic structure typical of certain actinobacteria. This strain has been cataloged in the genomic database with the accession number LGED00000000.1, providing a reference for researchers interested in its genetic and functional properties. The classification of Saccharothrix sp. places it within the diverse group of actinobacteria, known for their significant roles in the production of bioactive compounds, including antibiotics. The streamlined replicon may suggest an adaptation that allows for efficient replication and resource utilization in specific environments. In terms of ecological significance, members of the Saccharothrix genus are often found in soil and marine environments, where they contribute to the decomposition of organic matter and nutrient cycling. This ecological role is critical for maintaining soil health and promoting biodiversity. The genetic characteristics of Saccharothrix sp. NRRL B-16348 may further elucidate its capabilities in environmental interactions and its potential applications in biotechnology, particularly in natural product discovery and soil remediation. Overall, the study of Saccharothrix sp. NRRL B-16348 offers insights into the functional diversity of actinobacteria and their ecological roles in various habitats.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderPseudonocardiales
FamilyPseudonocardiaceae
GenusSaccharothrix
SpeciesSaccharothrix sp. NRRL B-16348
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Saccharothrix sp. NRRL B-16348 P442contig99.1, whole genome

Gene Summary

Adenine Count

1560410 bp

Thymine Count

1559181 bp

Guanine Count

3885515 bp

Cytosine Count

3891376 bp

Genome Length

10896489 bp

Protein-coding Genes

8409 genes

Non-Coding Genes

94 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
phosphate-binding proteinADK67_00095Q9KK89Negative23405 - 2454438221.8
mycothiol acetyltransferaseADK67_00100C6WPR7Negative24724 - 2559631403.1
transcriptional regulatorADK67_00105Not AvailableNegative25750 - 2650527526.0
hydrolaseADK67_00110Not AvailablePositive26588 - 2745731518.6
hypothetical proteinADK67_00115Not AvailablePositive27454 - 2825728432.2
thioredoxinADK67_00120Not AvailablePositive28258 - 2870715472.9
membrane proteinADK67_00125Not AvailablePositive28914 - 2941117709.0
thiosulfate sulfurtransferaseADK67_00130P16385Positive29465 - 3031031271.1
Ncrna_class:otherNot AvailableNot AvailablePositive30259 - 30327Not Available
hypothetical proteinADK67_00135P0CG96Positive30313 - 3061510039.7

Displaying genes 41 – 50 of 8503 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

503 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000275keto-D-sorboseC6H12O6Chemical structure of keto-D-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da

Displaying 1–10 of 503 metabolites

Health Effects

No health effects information available for this bacterium.