Ensifer adhaerens strain SD006

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Ensifer

Description

Ensifer adhaerens strain SD006 is characterized by having a single replicon, which indicates a streamlined genomic structure. The genome of this strain is cataloged under the accession number LGAP00000000.1, providing a reference point for further studies and comparative analyses within the Ensifer genus. As a member of the Ensifer genus, known for its role in nitrogen fixation, strain SD006 may contribute to soil fertility and plant health, although specific metabolic capabilities or ecological roles of this strain were not provided. The presence of a single replicon suggests a potential for efficient replication and maintenance of genetic material, which may be advantageous in various environmental conditions. In summary, Ensifer adhaerens strain SD006, with its single replicon and established genomic accession, presents an opportunity for further exploration into its biological functions and environmental interactions, particularly regarding its potential contributions to soil ecosystems and plant-microbe interactions.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusEnsifer
SpeciesEnsifer adhaerens
Strainstrain SD006

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ensifer adhaerens strain SD006 contig99, whole genome shotgun

Gene Summary

Adenine Count

1430540 bp

Thymine Count

1438960 bp

Guanine Count

2306091 bp

Cytosine Count

2283953 bp

Genome Length

7459544 bp

Protein-coding Genes

6606 genes

Non-Coding Genes

60 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
abc transporter substrate-binding proteinAC244_34060Not AvailableNegative7248556 - 725013057819.5
gntr family transcriptional regulatorAC244_34065Not AvailablePositive7250280 - 725099026959.3
dihydrodipicolinate synthaseAC244_34070A3CVI7Positive7251004 - 725191231898.4
isomeraseAC244_34075Q2P1Q3Positive7251924 - 725306342570.8
plasmid stabilization proteinAC244_34080Not AvailableNegative7253395 - 725380215037.1
prevent-host-death proteinAC244_34085Not AvailableNegative7253802 - 72540569340.02
phosphatidylethanolamine-binding proteinAC244_34095O26373Negative7254848 - 725532116990.3
hypothetical proteinAC244_34105Not AvailablePositive7256399 - 725724430062.4
nucleotidyltransferaseAC244_34110Not AvailablePositive7257671 - 725860035845.5
integraseAC244_34115Not AvailableNegative7258951 - 726010842244.6

Displaying genes 6511 – 6520 of 6666 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

377 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000047sophoroseC12H22O11Chemical structure of sophoroseNot available
Average342.297Da
Monoisotopic342.116211528Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002634-(hydroxymethyl)benzenesulfonateC7H7O4SChemical structure of 4-(hydroxymethyl)benzenesulfonateNot available
Average187.19Da
Monoisotopic187.007053459Da
BASm00002654-formylbenzenesulfonateC7H5O4SChemical structure of 4-formylbenzenesulfonateNot available
Average185.17Da
Monoisotopic184.991403395Da
BASm0000275keto-D-sorboseC6H12O6Chemical structure of keto-D-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da

Displaying 1–10 of 377 metabolites

Health Effects

No health effects information available for this bacterium.