Helicobacter pylori strain UM087

Gram-negativeSpirillaNon-motileMicroaerophilic

Kingdom

Pseudomonadati

Phylum

Campylobacterota

Class

Epsilonproteobacteria

Order

Campylobacterales

Family

Helicobacteraceae

Genus

Helicobacter

Description

Helicobacter pylori strain UM087 is a Gram-negative bacterium characterized by its spiral shape and microaerophilic oxygen requirement. It is primarily found in host-associated environments, indicating its close relationship with various hosts, including Homo sapiens, Gallus gallus, and several other mammalian and avian species. The organism features a single replicon and possesses two membranes, consistent with its classification as a member of the Proteobacteria phylum. UM087 is non-motile despite having flagella, suggesting it relies on other mechanisms for colonization within the gastrointestinal tract. The optimal temperature for its growth is 37°C, within a mesophilic temperature range, which aligns with the conditions of the human stomach. This strain is notably pathogenic to humans, associated with a range of significant health effects, including chronic gastric inflammation, gastric ulcers, and various forms of gastric cancer, such as adenocarcinoma and mucosa-associated lymphoid tissue lymphoma. The bacterium is also implicated in the development of conditions like gastroesophageal reflux disease (GERD) and functional dyspepsia. The diverse host range and the extensive list of associated diseases highlight the ecological role of H. pylori strain UM087 in gastrointestinal pathology. Its presence can lead to severe health consequences, emphasizing the importance of understanding its biological interactions and potential for causing chronic infections within human and animal populations.

Taxonomy

KingdomPseudomonadati
PhylumCampylobacterota
ClassEpsilonproteobacteria
OrderCampylobacterales
FamilyHelicobacteraceae
GenusHelicobacter
SpeciesHelicobacter pylori
Strainstrain UM087

Profile

Physiology
Gram staining propertiesNegative
ShapeSpirilla
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Helicobacter pylori strain UM087
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsMicroaerophilic
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Aves
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Helicobacter pylori strain UM087 Contig_12_UM087, whole genome

Gene Summary

Adenine Count

511421 bp

Thymine Count

500653 bp

Guanine Count

324099 bp

Cytosine Count

321554 bp

Genome Length

1657840 bp

Protein-coding Genes

1444 genes

Non-Coding Genes

64 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
peptide abc transporter substrate-binding proteinAB991_06075Not AvailablePositive1250477 - 125225868605.5
microcin abc transporter permeaseAB991_06080Not AvailablePositive1252255 - 125330138986.8
hypothetical proteinAB991_06085Not AvailablePositive1253310 - 125390022026.5
shikimate dehydrogenaseAB991_06090Not AvailablePositive1253908 - 125469929217.8
ribonuclease rAB991_06095Not AvailablePositive1254699 - 125663374463.0
dna polymerase iii subunit deltaAB991_06100Not AvailablePositive1256623 - 125764539541.7
30s ribosomal protein s6AB991_06105Not AvailablePositive1257798 - 125822616956.3
single-stranded dna-binding proteinAB991_06110Not AvailablePositive1258236 - 125878120263.6
30s ribosomal protein s18AB991_06115Not AvailablePositive1258804 - 125906110448.9
membrane proteinAB991_06120Not AvailablePositive1259396 - 126151677229.2

Displaying genes 1131 – 1140 of 1508 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Chronic gastric inflammationCausesPMC10226649
Gastric cancerCausesPMC10226649
Gastric ulcersCausesPMC10420633
Stomach carcinomaCausesPMC10420633
UlcersCausesPMC10420633
AdenocarcinomaCausesPMC10420633
Mucosa-associated lymphoid tissue lymphomaCausesPMC10420633
GerdCausesPMC10712878
GastritisCausesPMC10712878
Gastric cancerCausesPMC10732068

Displaying health effects 1 – 10 of 94 in total