Frankia sp. R43

Gram-positiveFilamentous

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Frankiales

Family

Frankiaceae

Genus

Frankia

Description

Frankia sp. R43 is a Gram-positive, filamentous bacterium. It is characterized by having a single replicon, which suggests a streamlined genetic organization. The accession number for this strain is LFCW00000000.1, indicating its unique identification within genomic databases. As a member of the genus Frankia, this species is notable for its ability to form symbiotic relationships with certain plants, particularly those in the actinorhizal families. This association is critical for nitrogen fixation, a process that converts atmospheric nitrogen into a form that plants can utilize, thereby enhancing soil fertility. The filamentous morphology of Frankia sp. R43 may play a role in its ecological function, allowing it to effectively colonize plant roots and facilitate the exchange of nutrients. The biological interactions of Frankia sp. R43 with its plant hosts can have significant ecological implications, particularly in nutrient-poor environments where nitrogen is a limiting factor. The ability to fix nitrogen not only benefits the host plants but also contributes to the overall health of the ecosystem by improving soil quality and supporting biodiversity. Thus, Frankia sp. R43 exemplifies the intricate relationships between microorganisms and plants that are essential for sustaining healthy ecosystems.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderFrankiales
FamilyFrankiaceae
GenusFrankia
SpeciesFrankia sp. R43
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeFilamentous
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Frankia sp. R43
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Frankia sp. R43 contig046, whole genome shotgun sequence.

Gene Summary

Adenine Count

1525860 bp

Thymine Count

1513327 bp

Guanine Count

3689872 bp

Cytosine Count

3719809 bp

Genome Length

10448868 bp

Protein-coding Genes

7644 genes

Non-Coding Genes

61 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nitrogen fixation protein nifbACG83_37140P46044Positive9287060 - 928903969351.2
heme biosynthesis protein hemyACG83_37145P46045Positive9289036 - 928965621407.3
thiamine biosynthesis protein thifACG83_37150P46049Positive9289907 - 929066226872.4
cysteine desulfuraseACG83_37155Q9Z5X5Positive9290659 - 929191242776.0
2-oxoglutarate ferredoxin oxidoreductase subunit alphaACG83_37160Not AvailablePositive9291866 - 929385469666.3
2-oxoacid:ferredoxin oxidoreductase subunit betaACG83_37165O53181Positive9293851 - 929488236615.3
(4fe-4s)-binding proteinACG83_37170P64123Positive9295081 - 929542211937.3
acetyltransferaseACG83_37175Not AvailablePositive9296222 - 929715433917.0
hypothetical proteinACG83_37185Not AvailablePositive9299026 - 929946315604.3
hypothetical proteinACG83_37190Not AvailablePositive9299616 - 930009217308.8

Displaying genes 6901 – 6910 of 7705 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

515 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000338(1R,4R,5R)-5-hydroxycamphorC10H16O2Chemical structure of (1R,4R,5R)-5-hydroxycamphorNot available
Average168.2328Da
Monoisotopic168.115029756Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da

Displaying 1–10 of 515 metabolites

Health Effects

No health effects information available for this bacterium.