Frankia sp. R43

Gram-positiveFilamentous

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Frankiales

Family

Frankiaceae

Genus

Frankia

Description

Frankia sp. R43 is a Gram-positive, filamentous bacterium. It is characterized by having a single replicon, which suggests a streamlined genetic organization. The accession number for this strain is LFCW00000000.1, indicating its unique identification within genomic databases. As a member of the genus Frankia, this species is notable for its ability to form symbiotic relationships with certain plants, particularly those in the actinorhizal families. This association is critical for nitrogen fixation, a process that converts atmospheric nitrogen into a form that plants can utilize, thereby enhancing soil fertility. The filamentous morphology of Frankia sp. R43 may play a role in its ecological function, allowing it to effectively colonize plant roots and facilitate the exchange of nutrients. The biological interactions of Frankia sp. R43 with its plant hosts can have significant ecological implications, particularly in nutrient-poor environments where nitrogen is a limiting factor. The ability to fix nitrogen not only benefits the host plants but also contributes to the overall health of the ecosystem by improving soil quality and supporting biodiversity. Thus, Frankia sp. R43 exemplifies the intricate relationships between microorganisms and plants that are essential for sustaining healthy ecosystems.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderFrankiales
FamilyFrankiaceae
GenusFrankia
SpeciesFrankia sp. R43
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeFilamentous
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Frankia sp. R43
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Frankia sp. R43 contig046, whole genome shotgun sequence.

Gene Summary

Adenine Count

1525860 bp

Thymine Count

1513327 bp

Guanine Count

3689872 bp

Cytosine Count

3719809 bp

Genome Length

10448868 bp

Protein-coding Genes

7644 genes

Non-Coding Genes

61 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nicotinate-nucleotide pyrophosphorylaseACG83_26660P46714Negative6682465 - 668336730111.2
aspartate oxidaseACG83_26665Q9X8N8Negative6683451 - 668526262469.1
aspartate decarboxylaseACG83_26670A8LCM7Negative6685267 - 668577317050.4
pantothenate synthetaseACG83_26675Q0RB94Negative6685777 - 668694040102.7
membrane proteinACG83_26680A0QP18Negative6687347 - 668968981033.6
phosphoribosylaminoimidazole-succinocarboxamide synthaseACG83_26685A4FQI3Negative6689919 - 669083033260.1
adenylosuccinate lyaseACG83_26690P74384Negative6690879 - 669218647098.4
phosphoribosylaminoimidazole carboxylaseACG83_26695Q9UY68Negative6692183 - 669273118162.7
phosphoribosylamine--glycine ligaseACG83_26700Q9RKL4Negative6692743 - 669400843417.6
hypothetical proteinACG83_26705Not AvailableNegative6694097 - 669509535509.3

Displaying genes 4981 – 4990 of 7705 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

515 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000338(1R,4R,5R)-5-hydroxycamphorC10H16O2Chemical structure of (1R,4R,5R)-5-hydroxycamphorNot available
Average168.2328Da
Monoisotopic168.115029756Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da

Displaying 1–10 of 515 metabolites

Health Effects

No health effects information available for this bacterium.