Helicobacter pylori strain UM139

Gram-negativeSpirillaNon-motileMicroaerophilic

Kingdom

Pseudomonadati

Phylum

Campylobacterota

Class

Epsilonproteobacteria

Order

Campylobacterales

Family

Helicobacteraceae

Genus

Helicobacter

Description

Helicobacter pylori strain UM139 is a gram-negative, microaerophilic bacterium characterized by its spiral shape and presence of flagella, which enables its motility in a host-associated habitat. This strain is known to be free-living and primarily colonizes various hosts, including Homo sapiens, Gallus gallus, and other mammals and birds, as well as amoebas and rodents. It replicates using a single replicon and possesses two membranes, which is typical of gram-negative bacteria. The optimal growth temperature for UM139 is 37°C, placing it within the mesophilic temperature range. Its unique traits contribute to its pathogenicity in humans, where it is associated with a range of gastrointestinal diseases. The health effects linked to this strain include chronic gastric inflammation, gastric ulcers, and several forms of gastric cancer, such as gastric adenocarcinoma and mucosa-associated lymphoid tissue (MALT) lymphoma. Additionally, UM139 can lead to conditions like dyspepsia, GERD, and atrophic gastritis. The ecological insight derived from the presence of H. pylori in diverse hosts suggests a complex interaction with the host's gastrointestinal environment. While it often leads to chronic diseases in humans, the strain’s ability to inhabit various species indicates its evolutionary adaptability and potential role in the microbiome of both human and animal hosts. Understanding these interactions could provide further insights into its pathogenic mechanisms and the broader implications for gastrointestinal health.

Taxonomy

KingdomPseudomonadati
PhylumCampylobacterota
ClassEpsilonproteobacteria
OrderCampylobacterales
FamilyHelicobacteraceae
GenusHelicobacter
SpeciesHelicobacter pylori
Strainstrain UM139

Profile

Physiology
Gram staining propertiesNegative
ShapeSpirilla
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Helicobacter pylori strain UM139
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsMicroaerophilic
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Aves
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Helicobacter pylori strain UM139


Gene Summary

Adenine Count

494285 bp

Thymine Count

494647 bp

Guanine Count

314626 bp

Cytosine Count

313906 bp

Genome Length

1617542 bp

Protein-coding Genes

1483 genes

Non-Coding Genes

41 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
virb3 type iv secretion proteinAC785_00060Not AvailableNegative10034 - 1030010145.5
virb2 type iv secretion proteinAC785_00065Not AvailableNegative10301 - 1057610410.1
hypothetical proteinAC785_00070Not AvailableNegative10600 - 1212358650.8
hypothetical proteinAC785_00075Not AvailableNegative12130 - 1242311457.3
Ncrna_class:rnase_p_rnaNot AvailableNot AvailablePositive13157 - 13472Not Available
hypothetical proteinAC785_00080Not AvailableNegative12443 - 1322230458.5
5s ribosomal rnaNot AvailableNot AvailablePositive13586 - 13703Not Available
23s ribosomal rnaNot AvailableNot AvailablePositive13935 - 16822Not Available
membrane proteinAC785_00095Not AvailableNegative17365 - 174845239.83
hypothetical proteinAC785_00105Not AvailablePositive18426 - 2025571510.3

Displaying genes 11 – 20 of 1524 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Chronic gastric inflammationCausesPMC10226649
Gastric cancerCausesPMC10226649
Gastric ulcersCausesPMC10420633
Stomach carcinomaCausesPMC10420633
UlcersCausesPMC10420633
AdenocarcinomaCausesPMC10420633
Mucosa-associated lymphoid tissue lymphomaCausesPMC10420633
GerdCausesPMC10712878
GastritisCausesPMC10712878
Gastric cancerCausesPMC10732068

Displaying health effects 1 – 10 of 66 in total