Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain BIDMC112 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1283364 bp
Thymine Count
1281198 bp
Guanine Count
1324998 bp
Cytosine Count
1318883 bp
Genome Length
5208446 bp
Protein-coding Genes
4697 genes
Non-Coding Genes
378 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Tail fiber assembly protein | SK85_00885 | Not Available | Positive | 928741 - 929160 | 15809.6 |
| Putative tail fiber assembly protein | SK85_00886 | Not Available | Negative | 929132 - 929734 | 21732.1 |
| Tail fiber protein | SK85_00887 | P33227 | Negative | 929734 - 930309 | 20693.2 |
| Variable tail fiber protein | SK85_00888 | Not Available | Positive | 930353 - 930971 | 21895.5 |
| Putative tail fiber assembly protein | SK85_00889 | P09153 | Positive | 930971 - 931573 | 21732.1 |
| Tail fiber assembly protein | SK85_00890 | P77656 | Negative | 931545 - 931964 | 15809.6 |
| Recombinase family protein | SK85_00891 | P03014 | Positive | 932397 - 932963 | 21135.6 |
| Major tail sheath protein | SK85_00892 | P22501 | Positive | 933106 - 934278 | 42344.2 |
| Major tail tube protein | SK85_00893 | P22502 | Positive | 934288 - 934803 | 18816.4 |
| Phage tail assembly protein | SK85_00894 | O64313 | Positive | 934858 - 935160 | 10869.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





