Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain BIDMC112 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1283364 bp
Thymine Count
1281198 bp
Guanine Count
1324998 bp
Cytosine Count
1318883 bp
Genome Length
5208446 bp
Protein-coding Genes
4697 genes
Non-Coding Genes
378 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ureidoglycolate dehydrogenase (nad(+)) | SK85_00539 | P77555 | Negative | 578042 - 579091 | 37969.3 |
| protein fdra | SK85_00540 | Q47208 | Positive | 579408 - 581075 | 58532.3 |
| hypothetical protein | SK85_00541 | P77129 | Positive | 581085 - 582344 | 45021.6 |
| carboxylase | SK85_00542 | P0AAS6 | Positive | 582355 - 583170 | 29620.8 |
| carbamate kinase | SK85_00543 | P37306 | Positive | 583167 - 584060 | 31674.1 |
| n5-carboxyaminoimidazole ribonucleotide synthase | SK85_00544 | P09029 | Negative | 584255 - 585322 | 39450.3 |
| n5-carboxyaminoimidazole ribonucleotide mutase | SK85_00545 | P0AG19 | Negative | 585319 - 585828 | 17781.3 |
| udp-2,3-diacylglucosamine hydrolase | SK85_00546 | B6I0G9 | Negative | 585946 - 586668 | 26925.7 |
| peptidyl-prolyl cis-trans isomerase b | SK85_00547 | P23869 | Negative | 586671 - 587165 | 18168.5 |
| cysteine-trna ligase | SK85_00548 | A7ZIT5 | Positive | 587339 - 588724 | 52128.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





