Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain BIDMC112 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1283364 bp
Thymine Count
1281198 bp
Guanine Count
1324998 bp
Cytosine Count
1318883 bp
Genome Length
5208446 bp
Protein-coding Genes
4697 genes
Non-Coding Genes
378 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acyl carrier protein phosphodiesterase | SK85_00429 | B7NJ98 | Negative | 457066 - 457647 | 22962.3 |
| s-adenosylmethionine:trna ribosyltransferase-isomerase | SK85_00430 | A7ZIF7 | Positive | 457740 - 458810 | 39433.0 |
| queuine trna-ribosyltransferase | SK85_00431 | A7ZIF8 | Positive | 458866 - 459993 | 42596.1 |
| secyeg protein translocase auxillary subunit | SK85_00432 | P0ADZ9 | Positive | 460016 - 460348 | 11887.9 |
| protein translocase subunit secd | SK85_00433 | P0AG91 | Positive | 460409 - 462223 | 65171.4 |
| protein translocase subunit secf | SK85_00434 | P0AG95 | Positive | 462234 - 463205 | 35384.6 |
| hypothetical protein | SK85_00435 | P0AAQ4 | Positive | 463334 - 463681 | 13364.7 |
| nucleoside-specific channel-forming protein tsx | SK85_00436 | P0A928 | Negative | 463858 - 464742 | 33590.6 |
| lipoprotein | SK85_00437 | P46122 | Negative | 465041 - 465580 | 19561.5 |
| transcriptional repressor nrdr | SK85_00438 | A7ZIG6 | Positive | 465731 - 466180 | 17229.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





