Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain BIDMC112 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1283364 bp
Thymine Count
1281198 bp
Guanine Count
1324998 bp
Cytosine Count
1318883 bp
Genome Length
5208446 bp
Protein-coding Genes
4697 genes
Non-Coding Genes
378 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Portal protein | SK85_00866 | P21314 | Negative | 914024 - 915058 | 38947.8 |
| Terminase atpase subunit family protein | SK85_00867 | P25479 | Negative | 915058 - 916824 | 67061.4 |
| Gpo family capsid scaffolding protein | SK85_00868 | P25478 | Positive | 916967 - 917800 | 30645.8 |
| Major capsid protein, p2 family | SK85_00869 | P25477 | Positive | 917817 - 918875 | 39151.4 |
| Terminase endonuclease subunit | SK85_00870 | P25476 | Positive | 918879 - 919529 | 23835.7 |
| Head completion/stabilization protein | SK85_00871 | Not Available | Positive | 919625 - 920089 | 17670.8 |
| Tail protein x | SK85_00872 | P51772 | Positive | 920089 - 920292 | 7592.02 |
| Holin | SK85_00873 | Not Available | Positive | 920296 - 920511 | 8128.01 |
| Lysozyme | SK85_00874 | Q6XQ98 | Positive | 920492 - 921004 | 18665.6 |
| Hypothetical protein | SK85_00875 | Not Available | Positive | 921006 - 921383 | 14080.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





