Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain BIDMC112 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1283364 bp
Thymine Count
1281198 bp
Guanine Count
1324998 bp
Cytosine Count
1318883 bp
Genome Length
5208446 bp
Protein-coding Genes
4697 genes
Non-Coding Genes
378 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SK85_04734 | Not Available | Negative | 4919542 - 4919691 | 5663.13 |
| lipoate-protein ligase a | SK85_04735 | B2TZR8 | Negative | 4919723 - 4920739 | 37923.9 |
| protein smp | SK85_04736 | P60777 | Negative | 4920767 - 4921411 | 24084.2 |
| phosphoserine phosphatase | SK85_04737 | P0AGB1 | Positive | 4921517 - 4922485 | 35090.8 |
| dna repair protein rada | SK85_04738 | P24554 | Positive | 4922534 - 4923916 | 49445.0 |
| trifunctional nad biosynthesis/regulator protein nadr | SK85_04739 | P27278 | Positive | 4923937 - 4925169 | 47334.4 |
| abc transporter atp-binding protein | SK85_04740 | P0A9W4 | Negative | 4925476 - 4927143 | 62446.5 |
| soluble lytic murein transglycosylase | SK85_04741 | P0AGC4 | Positive | 4927354 - 4929291 | 73366.1 |
| trp operon repressor | SK85_04742 | A7ZVT5 | Positive | 4929411 - 4929707 | 11320.7 |
| non-canonical purine ntp phosphatase | SK85_04743 | B1IS25 | Negative | 4929792 - 4930313 | 18526.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





