Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain BIDMC112 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1283364 bp
Thymine Count
1281198 bp
Guanine Count
1324998 bp
Cytosine Count
1318883 bp
Genome Length
5208446 bp
Protein-coding Genes
4697 genes
Non-Coding Genes
378 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| outer membrane usher protein fimd | SK85_04664 | P30130 | Positive | 4846675 - 4849311 | 96576.0 |
| protein fimf | SK85_04665 | P08189 | Positive | 4849321 - 4849851 | 18764.4 |
| protein fimg | SK85_04666 | P08190 | Positive | 4849864 - 4850367 | 17385.4 |
| protein fimh | SK85_04667 | P08191 | Positive | 4850387 - 4851289 | 31428.1 |
| high-affinity gluconate transporter | SK85_04668 | P0AC95 | Negative | 4851463 - 4852806 | 47141.0 |
| mannonate dehydratase | SK85_04669 | A7ZVL9 | Positive | 4853146 - 4854330 | 44826.5 |
| d-mannonate oxidoreductase | SK85_04670 | P39160 | Positive | 4854411 - 4855871 | 53673.3 |
| hypothetical protein | SK85_04671 | Not Available | Negative | 4855893 - 4856087 | 6817.39 |
| dna-binding transcriptional repressor | SK85_04672 | P39161 | Positive | 4856134 - 4856859 | 27585.8 |
| hypothetical protein | SK85_04673 | P39374 | Negative | 4857000 - 4857830 | 30771.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





