Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain BIDMC112 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1283364 bp
Thymine Count
1281198 bp
Guanine Count
1324998 bp
Cytosine Count
1318883 bp
Genome Length
5208446 bp
Protein-coding Genes
4697 genes
Non-Coding Genes
378 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| toxin-antitoxin biofilm protein taba | SK85_04614 | P0AF96 | Positive | 4798542 - 4798994 | 16898.4 |
| hypothetical protein | SK85_04615 | Not Available | Positive | 4799117 - 4800436 | 50424.0 |
| hypothetical protein | SK85_04616 | P39336 | Positive | 4800423 - 4800653 | 9336.44 |
| ornithine carbamoyltransferase | SK85_04617 | B7LCW4 | Negative | 4800754 - 4801758 | 36865.1 |
| hypothetical protein | SK85_04618 | P0AF91 | Positive | 4801920 - 4802336 | 15617.5 |
| acetyltransferase | SK85_04619 | P39337 | Negative | 4802382 - 4802885 | 18593.5 |
| inner membrane protein yjgn | SK85_04620 | P58219 | Positive | 4803078 - 4804274 | 44832.0 |
| valine-trna ligase | SK85_04621 | P07118 | Negative | 4804330 - 4807185 | 108198.0 |
| dna polymerase iii subunit chi | SK85_04622 | P28905 | Negative | 4807185 - 4807667 | 18119.3 |
| a cyteinylglycinase, transcription regulator and site-specific recombination factor | SK85_04623 | A7ZVE0 | Negative | 4807762 - 4809273 | 54883.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





