Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain BIDMC112 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1283364 bp
Thymine Count
1281198 bp
Guanine Count
1324998 bp
Cytosine Count
1318883 bp
Genome Length
5208446 bp
Protein-coding Genes
4697 genes
Non-Coding Genes
378 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| prepilin peptidase-dependent protein d | SK85_00104 | P36647 | Negative | 120486 - 120926 | 15622.7 |
| nicotinate-nucleotide pyrophosphorylase | SK85_00105 | P30011 | Negative | 121129 - 122022 | 32764.0 |
| 1,6-anhydro-n-acetylmuramyl-l-alanine amidase ampd | SK85_00106 | P13016 | Positive | 122110 - 122661 | 20537.2 |
| protein ampe | SK85_00107 | P0AE14 | Positive | 122658 - 123512 | 32123.9 |
| aromatic amino acid transporter arop | SK85_00108 | P15993 | Negative | 123555 - 124925 | 49561.9 |
| pyruvate dehydrogenase complex repressor | SK85_00109 | P0ACM1 | Positive | 125469 - 126233 | 29427.2 |
| pyruvate dehydrogenase e1 component | SK85_00110 | P0AFG9 | Positive | 126394 - 129057 | 99674.1 |
| dihydrolipoyllysine-residue acetyltransferase | SK85_00111 | P06959 | Positive | 129072 - 130964 | 66099.8 |
| dihydrolipoyl dehydrogenase | SK85_00112 | P0A9P2 | Positive | 131289 - 132713 | 50691.4 |
| hypothetical protein | SK85_00113 | Not Available | Negative | 132784 - 133908 | 43733.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





