Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain BIDMC112 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1283364 bp
Thymine Count
1281198 bp
Guanine Count
1324998 bp
Cytosine Count
1318883 bp
Genome Length
5208446 bp
Protein-coding Genes
4697 genes
Non-Coding Genes
378 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alpha-d-ribose 1-methylphosphonate 5-triphosphate synthase subunit phnl | SK85_04434 | P16679 | Negative | 4613146 - 4613826 | 24719.9 |
| phosphonate c-p lyase system protein phnk | SK85_04435 | P16678 | Negative | 4613937 - 4614695 | 27832.6 |
| alpha-d-ribose 1-methylphosphonate 5-phosphate c-p lyase | SK85_04436 | P16688 | Negative | 4614692 - 4615537 | 31846.9 |
| alpha-d-ribose 1-methylphosphonate 5-triphosphate synthase subunit phni | SK85_04437 | P16687 | Negative | 4615530 - 4616594 | 38855.0 |
| alpha-d-ribose 1-methylphosphonate 5-triphosphate synthase subunit phnh | SK85_04438 | P16686 | Negative | 4616594 - 4617178 | 21028.6 |
| alpha-d-ribose 1-methylphosphonate 5-triphosphate synthase subunit phng | SK85_04439 | P16685 | Negative | 4617175 - 4617627 | 16540.6 |
| phosphonate metabolism transcriptional regulator phnf | SK85_04440 | P16684 | Negative | 4617628 - 4618353 | 27623.1 |
| hypothetical protein | SK85_04441 | P0DP70 | Negative | 4618374 - 4618742 | 13335.7 |
| phosphonate abc transporter, periplasmic phosphonate binding protein | SK85_04442 | P16682 | Negative | 4619267 - 4620283 | 37372.6 |
| phosphonate import atp-binding protein phnc | SK85_04443 | P16677 | Negative | 4620308 - 4621096 | 29432.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





