Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain BIDMC112 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1283364 bp
Thymine Count
1281198 bp
Guanine Count
1324998 bp
Cytosine Count
1318883 bp
Genome Length
5208446 bp
Protein-coding Genes
4697 genes
Non-Coding Genes
378 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| d-allose transport system permease alsc | SK85_04424 | P32720 | Negative | 4604420 - 4605400 | 34332.8 |
| d-allose import atp-binding protein alsa | SK85_04425 | P32721 | Negative | 4605379 - 4606911 | 56748.3 |
| d-allose-binding periplasmic protein | SK85_04426 | P39265 | Negative | 4607038 - 4607973 | 32911.7 |
| hth-type transcriptional regulator rpir | SK85_04427 | P0ACS8 | Negative | 4608032 - 4608922 | 32364.1 |
| ribose-5-phosphate isomerase b | SK85_04428 | P37351 | Positive | 4609281 - 4609730 | 16074.3 |
| hypothetical protein | SK85_04429 | Q8FAW3 | Positive | 4609799 - 4610128 | 13416.3 |
| phosphoribosyl 1,2-cyclic phosphodiesterase | SK85_04430 | P16692 | Negative | 4610275 - 4611033 | 27849.3 |
| acyltransferase | SK85_04431 | P16691 | Negative | 4611035 - 4611469 | 16618.9 |
| ribose 1,5-bisphosphate phosphokinase phnn | SK85_04432 | P16690 | Negative | 4611456 - 4612013 | 20730.8 |
| alpha-d-ribose 1-methylphosphonate 5-triphosphate diphosphatase | SK85_04433 | P16689 | Negative | 4612013 - 4613149 | 42012.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





