Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain BIDMC112 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1283364 bp
Thymine Count
1281198 bp
Guanine Count
1324998 bp
Cytosine Count
1318883 bp
Genome Length
5208446 bp
Protein-coding Genes
4697 genes
Non-Coding Genes
378 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| udp-3-o-[3-hydroxymyristoyl] n-acetylglucosamine deacetylase | SK85_00094 | A7ZHI7 | Positive | 109934 - 110851 | 33957.8 |
| secretion monitor | SK85_00095 | B7LFW7 | Positive | 111007 - 111594 | 21739.8 |
| protein translocase subunit seca | SK85_00096 | A7ZHI9 | Positive | 111656 - 114361 | 102021.0 |
| 8-oxo-dgtp diphosphatase | SK85_00097 | P08337 | Positive | 114421 - 114810 | 14927.9 |
| inhibitor yacg | SK85_00098 | A7ZHJ2 | Negative | 115026 - 115223 | 7306.49 |
| cell division protein zapd | SK85_00099 | B7LFX0 | Negative | 115233 - 115976 | 28293.3 |
| dephospho-coa kinase | SK85_00100 | P0A6J0 | Negative | 115976 - 116596 | 22623.0 |
| gmp reductase | SK85_00101 | B7UIF3 | Positive | 116821 - 117864 | 37385.8 |
| assembly protein in type iv pilin biogenesis, transmembrane protein | SK85_00102 | P36646 | Negative | 117899 - 119101 | 44453.2 |
| protein transporter hofb | SK85_00103 | P36645 | Negative | 119091 - 120476 | 50618.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





