Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain BIDMC112 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1283364 bp
Thymine Count
1281198 bp
Guanine Count
1324998 bp
Cytosine Count
1318883 bp
Genome Length
5208446 bp
Protein-coding Genes
4697 genes
Non-Coding Genes
378 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| methionine synthase | SK85_04354 | P13009 | Positive | 4520088 - 4523771 | 136005.0 |
| phosphate:na+ symporter | SK85_04355 | P0AF43 | Positive | 4523991 - 4525622 | 59470.7 |
| peptidase e | SK85_04356 | A7ZUN5 | Negative | 4525713 - 4526402 | 24571.7 |
| ribosomal large subunit pseudouridine synthase f | SK85_04357 | P32684 | Positive | 4526614 - 4527486 | 32478.5 |
| hypothetical protein | SK85_04358 | P32685 | Negative | 4527619 - 4527891 | 10532.7 |
| lysine-sensitive aspartokinase 3 | SK85_04359 | P08660 | Negative | 4528144 - 4529493 | 48534.6 |
| glucose-6-phosphate isomerase | SK85_04360 | B7LAX0 | Positive | 4530018 - 4531667 | 61533.1 |
| hypothetical protein | SK85_04361 | P0AF47 | Positive | 4532166 - 4532408 | 7386.46 |
| lipoprotein | SK85_04362 | P32687 | Positive | 4532522 - 4533160 | 23752.1 |
| hypothetical protein | SK85_04363 | P32688 | Positive | 4533157 - 4533894 | 26310.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





