Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain BIDMC112 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1283364 bp
Thymine Count
1281198 bp
Guanine Count
1324998 bp
Cytosine Count
1318883 bp
Genome Length
5208446 bp
Protein-coding Genes
4697 genes
Non-Coding Genes
378 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-glu | Not Available | Not Available | Positive | 4503402 - 4503477 | Not Available |
| hypothetical protein | SK85_04345 | P09162 | Positive | 4509302 - 4509685 | 14447.7 |
| acetyltransferase | SK85_04346 | P09163 | Negative | 4509748 - 4510191 | 16447.6 |
| homoserine o-succinyltransferase | SK85_04347 | B1IUN9 | Positive | 4510348 - 4511277 | 35715.1 |
| malate synthase a | SK85_04348 | P08997 | Positive | 4511546 - 4513147 | 60276.9 |
| isocitrate lyase | SK85_04349 | P0A9G7 | Positive | 4513177 - 4514481 | 47524.1 |
| isocitrate dehydrogenase kinase/phosphatase | SK85_04350 | C5A0V3 | Positive | 4514857 - 4516593 | 67702.4 |
| hypothetical protein | SK85_04351 | Not Available | Negative | 4516562 - 4516918 | 13580.3 |
| ankyrin repeat protein | SK85_04352 | Not Available | Negative | 4516915 - 4518747 | 69097.8 |
| acetate operon repressor | SK85_04353 | P16528 | Negative | 4519064 - 4519888 | 29741.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





