Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain BIDMC112 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1283364 bp
Thymine Count
1281198 bp
Guanine Count
1324998 bp
Cytosine Count
1318883 bp
Genome Length
5208446 bp
Protein-coding Genes
4697 genes
Non-Coding Genes
378 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rhamnulokinase | SK85_04237 | C5A072 | Negative | 4389649 - 4391118 | 54072.1 |
| hth-type transcriptional activator rhas | SK85_04238 | B7L9G1 | Positive | 4391406 - 4392242 | 32317.2 |
| hth-type transcriptional activator rhar | SK85_04239 | C5A074 | Positive | 4392226 - 4393164 | 35669.4 |
| l-rhamnose-proton symporter | SK85_04240 | C5A075 | Negative | 4393161 - 4394195 | 37279.0 |
| superoxide dismutase | SK85_04241 | P00448 | Positive | 4394480 - 4395100 | 23098.2 |
| 2-keto-3-deoxygluconate permease | SK85_04242 | B7UNN0 | Positive | 4395360 - 4396343 | 33671.4 |
| protein yiim | SK85_04243 | P32157 | Positive | 4396492 - 4397166 | 25372.1 |
| sensor protein cpxa | SK85_04244 | P0AE84 | Negative | 4397272 - 4398645 | 51627.3 |
| transcriptional regulatory protein cpxr | SK85_04245 | P0AE89 | Negative | 4398642 - 4399340 | 26313.7 |
| periplasmic protein cpxp | SK85_04246 | P0AE86 | Positive | 4399490 - 4399990 | 18966.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





