Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain BIDMC112 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1283364 bp
Thymine Count
1281198 bp
Guanine Count
1324998 bp
Cytosine Count
1318883 bp
Genome Length
5208446 bp
Protein-coding Genes
4697 genes
Non-Coding Genes
378 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sec-independent protein translocase tata | SK85_04164 | P69430 | Positive | 4313921 - 4314190 | 9620.49 |
| sec-independent protein translocase tatb | SK85_04165 | P69426 | Positive | 4314194 - 4314709 | 18421.8 |
| sec-independent protein translocase tatc | SK85_04166 | P69424 | Positive | 4314712 - 4315488 | 28877.9 |
| tat-linked quality control protein tatd | SK85_04167 | P27859 | Positive | 4315530 - 4316312 | 29028.6 |
| transcription antitermination protein rfah | SK85_04168 | P0AFW1 | Negative | 4316309 - 4316797 | 18341.3 |
| 3-octaprenyl-4-hydroxybenzoate carboxy-lyase | SK85_04169 | P0AAB5 | Positive | 4316964 - 4318457 | 55606.8 |
| nad(p)h-flavin reductase | SK85_04170 | P0AEN3 | Positive | 4318503 - 4319204 | 26243.5 |
| 3-ketoacyl-coa thiolase | SK85_04171 | P21151 | Negative | 4319582 - 4320745 | 40878.7 |
| fatty acid oxidation complex subunit alpha | SK85_04172 | A7ZU51 | Negative | 4320755 - 4322944 | 79653.6 |
| xaa-pro dipeptidase | SK85_04173 | A7ZU52 | Positive | 4323134 - 4324465 | 50178.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





