Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain BIDMC112 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1283364 bp
Thymine Count
1281198 bp
Guanine Count
1324998 bp
Cytosine Count
1318883 bp
Genome Length
5208446 bp
Protein-coding Genes
4697 genes
Non-Coding Genes
378 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| porphobilinogen deaminase | SK85_04134 | C4ZZ69 | Negative | 4281801 - 4282763 | 34617.9 |
| adenylate cyclase | SK85_04135 | P00936 | Positive | 4283129 - 4285675 | 97591.4 |
| protein cyay | SK85_04136 | A7ZU09 | Negative | 4285715 - 4286035 | 12232.0 |
| lipoprotein | SK85_04137 | P0ADN8 | Positive | 4286498 - 4286701 | 7177.59 |
| diaminopimelate epimerase | SK85_04138 | A7ZU14 | Positive | 4286738 - 4287562 | 30210.4 |
| hypothetical protein | SK85_04139 | P23305 | Positive | 4287559 - 4288266 | 26730.4 |
| tyrosine recombinase xerc | SK85_04140 | B7L968 | Positive | 4288263 - 4289159 | 33869.7 |
| flavin mononucleotide phosphatase yigb | SK85_04141 | P0ADP0 | Positive | 4289159 - 4289875 | 27123.4 |
| dna helicase ii | SK85_04142 | P03018 | Positive | 4289959 - 4292121 | 81994.7 |
| hypothetical protein | SK85_04143 | P27840 | Negative | 4292268 - 4293032 | 27910.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





