Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain BIDMC112 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1283364 bp
Thymine Count
1281198 bp
Guanine Count
1324998 bp
Cytosine Count
1318883 bp
Genome Length
5208446 bp
Protein-coding Genes
4697 genes
Non-Coding Genes
378 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| inner membrane protein yabi | SK85_00064 | P30149 | Positive | 74731 - 75495 | 28245.8 |
| thiamine import atp-binding protein thiq | SK85_00065 | P31548 | Negative | 75609 - 76307 | 25000.8 |
| thiamine transport system permease thip | SK85_00066 | P31549 | Negative | 76291 - 77901 | 59536.7 |
| thiamine-binding periplasmic protein | SK85_00067 | P31550 | Negative | 77877 - 78860 | 36165.2 |
| hth-type transcriptional regulator sgrr | SK85_00068 | P33595 | Negative | 79024 - 80679 | 63978.7 |
| hypothetical protein | SK85_00069 | C1P5Z7 | Positive | 80768 - 80899 | 5338.42 |
| sugar efflux transporter a | SK85_00070 | P31675 | Positive | 81001 - 82179 | 42715.8 |
| 3-isopropylmalate dehydratase small subunit | SK85_00071 | A7ZHG3 | Negative | 82228 - 82833 | 22488.7 |
| 3-isopropylmalate dehydratase large subunit | SK85_00072 | B7MAJ7 | Negative | 82844 - 84244 | 49944.8 |
| 3-isopropylmalate dehydrogenase | SK85_00073 | P30125 | Negative | 84247 - 85338 | 39519.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





