Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain BIDMC112 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1283364 bp
Thymine Count
1281198 bp
Guanine Count
1324998 bp
Cytosine Count
1318883 bp
Genome Length
5208446 bp
Protein-coding Genes
4697 genes
Non-Coding Genes
378 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| formamidopyrimidine-dna glycosylase | SK85_03962 | C4ZXM7 | Negative | 4101510 - 4102319 | 30291.8 |
| 50s ribosomal protein l33 | SK85_03963 | A8ARM4 | Negative | 4102417 - 4102584 | 6371.94 |
| 50s ribosomal protein l28 | SK85_03964 | A7ZTI8 | Negative | 4102605 - 4102841 | 9007.02 |
| dna repair protein radc | SK85_03965 | C4ZXN0 | Negative | 4103058 - 4103726 | 25345.0 |
| coenzyme a biosynthesis coabc | SK85_03966 | P0ABQ1 | Positive | 4103898 - 4105118 | 43440.7 |
| deoxyuridine 5'-triphosphate nucleotidohydrolase | SK85_03967 | P06968 | Positive | 4105096 - 4105554 | 16287.7 |
| nucleoid occlusion factor slma | SK85_03968 | A7ZTJ2 | Positive | 4105661 - 4106257 | 22837.7 |
| orotate phosphoribosyltransferase | SK85_03969 | B7UM49 | Negative | 4106294 - 4106935 | 23568.3 |
| ribonuclease ph | SK85_03970 | A7ZTJ4 | Negative | 4107001 - 4107717 | 25341.5 |
| hypothetical protein | SK85_03971 | P23839 | Positive | 4107844 - 4108707 | 33176.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





