Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain BIDMC112 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1283364 bp
Thymine Count
1281198 bp
Guanine Count
1324998 bp
Cytosine Count
1318883 bp
Genome Length
5208446 bp
Protein-coding Genes
4697 genes
Non-Coding Genes
378 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dnaj-like protein djla | SK85_00055 | P31680 | Positive | 60784 - 61599 | 30581.2 |
| hypothetical protein | SK85_00056 | P39220 | Positive | 61894 - 62703 | 29931.2 |
| 5s ribosomal rna | Not Available | Not Available | Positive | 62012 - 62126 | Not Available |
| ribosomal large subunit pseudouridine synthase a | SK85_00057 | P0AA37 | Negative | 63152 - 63811 | 24862.1 |
| rna polymerase-associated protein rapa | SK85_00058 | B7MAI2 | Negative | 63823 - 66729 | 109775.0 |
| dna polymerase ii | SK85_00059 | P21189 | Negative | 66894 - 69245 | 90057.6 |
| l-ribulose-5-phosphate 4-epimerase | SK85_00060 | P08203 | Negative | 69320 - 70015 | 25520.3 |
| l-arabinose isomerase | SK85_00061 | P08202 | Negative | 70215 - 71717 | 56077.2 |
| ribulokinase | SK85_00062 | P08204 | Negative | 71728 - 73428 | 61092.6 |
| arabinose operon regulatory protein | SK85_00063 | P0A9E1 | Positive | 73767 - 74645 | 33385.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





