Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain BIDMC112 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1283364 bp
Thymine Count
1281198 bp
Guanine Count
1324998 bp
Cytosine Count
1318883 bp
Genome Length
5208446 bp
Protein-coding Genes
4697 genes
Non-Coding Genes
378 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycosyl transferase | SK85_03942 | P11290 | Negative | 4080214 - 4081248 | 40526.6 |
| l-threonine 3-dehydrogenase | SK85_03943 | C4ZXK8 | Negative | 4081487 - 4082512 | 37241.3 |
| 2-amino-3-ketobutyrate coenzyme a ligase | SK85_03944 | P0AB78 | Negative | 4082522 - 4083718 | 43149.6 |
| protein yibb | SK85_03945 | P25666 | Negative | 4083993 - 4084865 | 34034.7 |
| adp-l-glycero-d-manno-heptose-6-epimerase | SK85_03946 | A7ZTH2 | Positive | 4085154 - 4086086 | 34895.0 |
| adp-heptose-lps heptosyltransferase 2 | SK85_03947 | P37692 | Positive | 4086096 - 4087142 | 39044.4 |
| lipopolysaccharide heptosyltransferase 1 | SK85_03948 | P24173 | Positive | 4087146 - 4088105 | 35545.7 |
| o-antigen ligase | SK85_03949 | P27243 | Positive | 4088115 - 4089374 | 46906.5 |
| lipopolysaccharide core biosynthesis protein | SK85_03950 | P27242 | Negative | 4089406 - 4090479 | 41731.7 |
| lipopolysaccharide core biosynthesis protein | SK85_03951 | P27241 | Negative | 4090512 - 4091363 | 32909.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





