Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain BIDMC112 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1283364 bp
Thymine Count
1281198 bp
Guanine Count
1324998 bp
Cytosine Count
1318883 bp
Genome Length
5208446 bp
Protein-coding Genes
4697 genes
Non-Coding Genes
378 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| inner membrane protein yiah | SK85_03882 | P37669 | Positive | 4015241 - 4016236 | 37572.1 |
| inner membrane protein yiaa | SK85_03883 | P0ADJ8 | Negative | 4016278 - 4016715 | 16123.6 |
| inner membrane protein yiab | SK85_03884 | P11286 | Negative | 4016761 - 4017102 | 12555.9 |
| xylulose kinase | SK85_03885 | P09099 | Negative | 4017271 - 4018725 | 52621.3 |
| xylose isomerase | SK85_03886 | C4ZXF6 | Negative | 4018797 - 4020119 | 49744.7 |
| d-xylose-binding periplasmic protein | SK85_03887 | P37387 | Positive | 4020485 - 4021477 | 35736.1 |
| xylose import atp-binding protein xylg | SK85_03888 | P37388 | Positive | 4021555 - 4023096 | 56459.9 |
| xylose transport system permease xylh | SK85_03889 | P0AGI6 | Positive | 4023074 - 4024255 | 41033.5 |
| xylose operon regulatory protein | SK85_03890 | P0ACI5 | Positive | 4024333 - 4025511 | 44871.7 |
| bax protein | SK85_03891 | P27297 | Negative | 4025707 - 4026531 | 30869.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





