Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain BIDMC112 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1283364 bp
Thymine Count
1281198 bp
Guanine Count
1324998 bp
Cytosine Count
1318883 bp
Genome Length
5208446 bp
Protein-coding Genes
4697 genes
Non-Coding Genes
378 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SK85_03832 | Not Available | Negative | 3952986 - 3953267 | 10470.1 |
| hth-type transcriptional regulator gadw | SK85_03833 | P63202 | Negative | 3953412 - 3954140 | 28030.0 |
| hth-type transcriptional regulator gadx | SK85_03834 | P37639 | Negative | 3954508 - 3955332 | 31550.3 |
| glutamate decarboxylase alpha | SK85_03835 | P69909 | Negative | 3955702 - 3957102 | 52688.0 |
| cytochrome c peroxidase | SK85_03836 | P37197 | Negative | 3957313 - 3958710 | 51573.3 |
| cytoplasmic trehalase | SK85_03837 | P62602 | Positive | 3959114 - 3960763 | 63700.1 |
| two-component system response regulator | SK85_03838 | P37640 | Negative | 3960814 - 3961416 | 22605.6 |
| transcriptional regulator | SK85_03839 | P37641 | Positive | 3961864 - 3962835 | 36096.0 |
| inner membrane protein yhjd | SK85_03840 | P37642 | Positive | 3962884 - 3963897 | 37913.6 |
| inner membrane metabolite transporter yhje | SK85_03841 | P37643 | Positive | 3964308 - 3965630 | 47210.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





