Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain BIDMC112 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1283364 bp
Thymine Count
1281198 bp
Guanine Count
1324998 bp
Cytosine Count
1318883 bp
Genome Length
5208446 bp
Protein-coding Genes
4697 genes
Non-Coding Genes
378 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lipoprotein signal peptidase | SK85_00027 | A7ZHB6 | Positive | 28503 - 28997 | 18129.3 |
| fkbp-type peptidyl-prolyl cis-trans isomerase | SK85_00028 | P0AEM2 | Positive | 29122 - 29571 | 16081.9 |
| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | SK85_00029 | A7ZHB8 | Positive | 29573 - 30523 | 34776.6 |
| non-specific ribonucleoside hydrolase rihc | SK85_00030 | B7N7Q4 | Positive | 30589 - 31503 | 32673.8 |
| 4-hydroxy-tetrahydrodipicolinate reductase | SK85_00031 | A7ZHC0 | Positive | 31670 - 32491 | 28745.3 |
| carbamoyl-phosphate synthase small chain | SK85_00032 | P0A6F2 | Positive | 32947 - 34095 | 41445.4 |
| carbamoyl-phosphate synthase large chain | SK85_00033 | P63737 | Positive | 34113 - 37334 | 117849.0 |
| transcriptional activatory protein caif | SK85_00034 | P0AE58 | Positive | 37596 - 37991 | 15437.1 |
| carnitine operon protein caie | SK85_00035 | Q0T8F9 | Negative | 38200 - 38790 | 21167.5 |
| carnitinyl-coa dehydratase | SK85_00036 | B1IRE0 | Negative | 38796 - 39581 | 28191.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





