Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain BIDMC112 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1283364 bp
Thymine Count
1281198 bp
Guanine Count
1324998 bp
Cytosine Count
1318883 bp
Genome Length
5208446 bp
Protein-coding Genes
4697 genes
Non-Coding Genes
378 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 50s ribosomal protein l4 | SK85_03632 | A8AQL8 | Negative | 3739219 - 3739824 | 22087.8 |
| 50s ribosomal protein l3 | SK85_03633 | A7ZSK9 | Negative | 3739835 - 3740464 | 22244.8 |
| 30s ribosomal protein s10 | SK85_03634 | A7ZSL0 | Negative | 3740497 - 3740808 | 11736.3 |
| hypothetical protein | SK85_03635 | P03825 | Negative | 3741046 - 3741465 | 15876.8 |
| general secretion pathway protein | SK85_03636 | P45756 | Negative | 3741467 - 3742936 | 55287.0 |
| type ii secretion system protein c | SK85_03637 | P45757 | Positive | 3743116 - 3743931 | 30039.9 |
| type ii secretion system protein d | SK85_03638 | P45758 | Positive | 3743915 - 3745867 | 70702.2 |
| type ii secretion system protein e | SK85_03639 | P45759 | Positive | 3745877 - 3747358 | 54613.9 |
| type ii secretion system protein f | SK85_03640 | P41441 | Positive | 3747355 - 3748551 | 44341.9 |
| type ii secretion system protein g | SK85_03641 | P41442 | Positive | 3748561 - 3748998 | 15906.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





