Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain BIDMC112 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1283364 bp
Thymine Count
1281198 bp
Guanine Count
1324998 bp
Cytosine Count
1318883 bp
Genome Length
5208446 bp
Protein-coding Genes
4697 genes
Non-Coding Genes
378 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| multidrug export protein acrf | SK85_03578 | P24181 | Positive | 3702274 - 3705378 | 111461.0 |
| hypothetical protein | SK85_03579 | Not Available | Negative | 3705235 - 3705525 | 11039.8 |
| outer membrane protein | SK85_03580 | P64623 | Positive | 3705631 - 3705852 | 7452.14 |
| periplasmic amino-acid abc transporter binding protein | SK85_03581 | P58068 | Positive | 3706283 - 3707308 | 37048.9 |
| amino-acid transporter subunit | SK85_03582 | P45767 | Positive | 3707376 - 3708557 | 43263.9 |
| inner membrane amino-acid abc transporter permease yhdy | SK85_03583 | P45768 | Positive | 3708567 - 3709670 | 41486.7 |
| amino-acid transporter subunit | SK85_03584 | P45769 | Positive | 3709678 - 3710436 | 28575.9 |
| Trna-thr | Not Available | Not Available | Positive | 3710822 - 3710897 | Not Available |
| Trna-ala | Not Available | Not Available | Positive | 3714496 - 3714571 | Not Available |
| Trna-ile | Not Available | Not Available | Positive | 3714614 - 3714690 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





