Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain BIDMC112 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1283364 bp
Thymine Count
1281198 bp
Guanine Count
1324998 bp
Cytosine Count
1318883 bp
Genome Length
5208446 bp
Protein-coding Genes
4697 genes
Non-Coding Genes
378 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| toluene abc transporter atp-binding protein | SK85_03508 | P63388 | Negative | 3626843 - 3627652 | 29098.6 |
| inner membrane protein yrbg | SK85_03509 | P45394 | Positive | 3627862 - 3628839 | 34742.9 |
| arabinose 5-phosphate isomerase kdsd | SK85_03510 | P45395 | Positive | 3628853 - 3629839 | 35198.3 |
| 3-deoxy-d-manno-octulosonate 8-phosphate phosphatase kdsc | SK85_03511 | P0ABZ5 | Positive | 3629860 - 3630426 | 20028.3 |
| lipopolysaccharide export system protein lptc | SK85_03512 | P0ADW1 | Positive | 3630423 - 3630998 | 21703.8 |
| lipopolysaccharide export system protein lpta | SK85_03513 | P0ADV3 | Positive | 3630967 - 3631524 | 20128.1 |
| lipopolysaccharide export system atp-binding protein lptb | SK85_03514 | P0A9V3 | Positive | 3631531 - 3632256 | 26802.3 |
| rna polymerase sigma-54 factor | SK85_03515 | P24255 | Positive | 3632304 - 3633737 | 53992.8 |
| ribosome hibernation promoting factor | SK85_03516 | P0AFX2 | Positive | 3633760 - 3634047 | 10750.9 |
| nitrogen regulatory protein | SK85_03517 | P69829 | Positive | 3634165 - 3634656 | 17960.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





