Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain BIDMC112 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1283364 bp
Thymine Count
1281198 bp
Guanine Count
1324998 bp
Cytosine Count
1318883 bp
Genome Length
5208446 bp
Protein-coding Genes
4697 genes
Non-Coding Genes
378 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| l-threonine dehydratase catabolic tdcb | SK85_03428 | P0AGF8 | Negative | 3549006 - 3549995 | 35234.5 |
| hth-type transcriptional regulator tdca | SK85_03429 | P0ACQ8 | Negative | 3550094 - 3551032 | 34540.9 |
| hypothetical protein | SK85_03430 | P11865 | Positive | 3551821 - 3552360 | 20577.6 |
| hypothetical protein | SK85_03431 | P11864 | Positive | 3552382 - 3553569 | 45295.4 |
| glycerate 2-kinase | SK85_03432 | P23524 | Negative | 3554592 - 3555737 | 39053.6 |
| 2-hydroxy-3-oxopropionate reductase | SK85_03433 | P0ABQ3 | Negative | 3555834 - 3556724 | 30661.6 |
| 5-keto-4-deoxy-d-glucarate aldolase | SK85_03434 | C4ZR38 | Negative | 3556754 - 3557524 | 27385.6 |
| (d)-galactarate transporter | SK85_03435 | P0AA81 | Negative | 3557540 - 3558874 | 49012.0 |
| d-galactarate dehydratase | SK85_03436 | P39829 | Positive | 3559249 - 3560820 | 56404.9 |
| antitoxin prlf | SK85_03437 | P15373 | Positive | 3560969 - 3561304 | 12359.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





