Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain BIDMC112 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1283364 bp
Thymine Count
1281198 bp
Guanine Count
1324998 bp
Cytosine Count
1318883 bp
Genome Length
5208446 bp
Protein-coding Genes
4697 genes
Non-Coding Genes
378 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| metal-dependent hydrolase | SK85_03398 | P42597 | Positive | 3519926 - 3520429 | 19483.7 |
| thioredoxin-like protein | SK85_03399 | P42598 | Positive | 3520506 - 3521198 | 25481.4 |
| nad(p)-binding dehydrogenase | SK85_03400 | P42599 | Positive | 3521277 - 3522263 | 36204.2 |
| inner membrane protein alx | SK85_03401 | P42601 | Positive | 3522546 - 3523511 | 35911.1 |
| serine/threonine transporter sstt | SK85_03402 | P0AGE5 | Positive | 3523910 - 3525154 | 43480.4 |
| inner membrane protein ygjv | SK85_03403 | P42603 | Negative | 3525159 - 3525710 | 20566.7 |
| altronate dehydratase | SK85_03404 | P42604 | Negative | 3525793 - 3527280 | 54096.2 |
| uronate isomerase | SK85_03405 | A7ZRX6 | Negative | 3527295 - 3528707 | 53990.1 |
| hexuronate transporter | SK85_03406 | P0AA79 | Positive | 3529190 - 3530488 | 46895.0 |
| exu regulon transcriptional regulator | SK85_03407 | P0ACL3 | Positive | 3530618 - 3531394 | 29837.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





