Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain BIDMC112 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1283364 bp
Thymine Count
1281198 bp
Guanine Count
1324998 bp
Cytosine Count
1318883 bp
Genome Length
5208446 bp
Protein-coding Genes
4697 genes
Non-Coding Genes
378 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| oxidoreductase | SK85_03138 | P64558 | Positive | 3238298 - 3239077 | 28655.2 |
| molybdopterin-binding subunit/fe-s binding subunit | SK85_03139 | Q46814 | Positive | 3239074 - 3241944 | 103539.0 |
| xanthine permease xanq | SK85_03140 | P67446 | Positive | 3242109 - 3243509 | 49111.5 |
| guanine deaminase | SK85_03141 | P76641 | Positive | 3243527 - 3244843 | 50101.8 |
| mfs transporter, agza family, xanthine/uracil permease | SK85_03142 | Q46817 | Positive | 3244879 - 3246246 | 46761.0 |
| oxidoreductase 4fe-4s ferredoxin-type subunit | SK85_03143 | Q46819 | Negative | 3246282 - 3246770 | 17529.4 |
| oxidoreductase fe-s subunit/nucleotide-binding subunit | SK85_03144 | Q46820 | Negative | 3246770 - 3248689 | 69131.0 |
| uric acid transporter uact | SK85_03145 | Q46821 | Positive | 3249125 - 3250573 | 51761.4 |
| hypothetical protein | SK85_03146 | C1P614 | Positive | 3250575 - 3250700 | 4757.28 |
| isopentenyl-diphosphate delta-isomerase | SK85_03147 | B7NW30 | Positive | 3250822 - 3251370 | 20447.3 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





