Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain BIDMC112 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1283364 bp
Thymine Count
1281198 bp
Guanine Count
1324998 bp
Cytosine Count
1318883 bp
Genome Length
5208446 bp
Protein-coding Genes
4697 genes
Non-Coding Genes
378 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sulfite reductase | SK85_03008 | A7ZQK7 | Negative | 3100157 - 3101956 | 66216.3 |
| 6-carboxy-5,6,7,8-tetrahydropterin synthase | SK85_03009 | P65871 | Positive | 3102272 - 3102637 | 13773.6 |
| oxidoreductase with fad/nad(p)-binding domain-containing protein | SK85_03010 | Q46904 | Positive | 3102715 - 3103986 | 46395.9 |
| ferredoxin-like protein ygco | SK85_03011 | Q46905 | Positive | 3103977 - 3104237 | 9662.52 |
| anti-terminator regulatory protein | SK85_03012 | Q46906 | Positive | 3104254 - 3104829 | 20787.6 |
| flavoprotein | SK85_03013 | Q46907 | Negative | 3104977 - 3105837 | 30309.3 |
| flavoprotein | SK85_03014 | Q46908 | Negative | 3105834 - 3106613 | 28722.1 |
| inner membrane metabolite transporter ygcs | SK85_03015 | Q46909 | Negative | 3106591 - 3108000 | 50862.3 |
| fad containing dehydrogenase | SK85_03016 | Q46911 | Negative | 3108022 - 3109476 | 53740.5 |
| deoxygluconate dehydrogenase | SK85_03017 | P76633 | Negative | 3109546 - 3110331 | 28101.7 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





