Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain BIDMC112 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1283364 bp
Thymine Count
1281198 bp
Guanine Count
1324998 bp
Cytosine Count
1318883 bp
Genome Length
5208446 bp
Protein-coding Genes
4697 genes
Non-Coding Genes
378 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| crispr-associated protein cas7/cse4/casc, subtype i-e | SK85_02998 | Q46899 | Negative | 3089717 - 3090772 | 38478.7 |
| crispr type i-e/-associated protein casb/cse2 | SK85_02999 | Not Available | Negative | 3090784 - 3091320 | 20797.8 |
| crispr type i-e/-associated protein casa/cse1 | SK85_03000 | Q46901 | Negative | 3091317 - 3092726 | 53549.8 |
| hypothetical protein | SK85_03001 | Not Available | Negative | 3092745 - 3092879 | 4772.69 |
| crispr-associated helicase cas3 | SK85_03002 | P38036 | Negative | 3092977 - 3095676 | 101960.0 |
| transposase for insertion sequence element is421 | SK85_03003 | Not Available | Positive | 3095915 - 3097027 | 40911.1 |
| hypothetical protein | SK85_03004 | Not Available | Positive | 3097050 - 3097190 | 5345.71 |
| toxic polypeptide, small | SK85_03005 | Q8X7U9 | Negative | 3097220 - 3097372 | 5603.15 |
| phosphoadenosine phosphosulfate reductase | SK85_03006 | B7UHH4 | Negative | 3097637 - 3098371 | 27992.4 |
| sulfite reductase | SK85_03007 | C5W865 | Negative | 3098445 - 3100157 | 63977.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





