Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain BIDMC112 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1283364 bp
Thymine Count
1281198 bp
Guanine Count
1324998 bp
Cytosine Count
1318883 bp
Genome Length
5208446 bp
Protein-coding Genes
4697 genes
Non-Coding Genes
378 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sulfate adenylyltransferase subunit 2 | SK85_02988 | B7LEH0 | Negative | 3081100 - 3082008 | 35190.3 |
| alkaline phosphatase isozyme conversion protein | SK85_02989 | P10423 | Positive | 3082260 - 3083297 | 37914.3 |
| hypothetical protein | SK85_02990 | Not Available | Negative | 3083683 - 3083823 | 5345.71 |
| transposase for insertion sequence element is421 | SK85_02991 | Not Available | Negative | 3083846 - 3084958 | 40911.1 |
| hypothetical protein | SK85_02992 | Not Available | Negative | 3085135 - 3085275 | 5345.71 |
| transposase for insertion sequence element is421 | SK85_02993 | Not Available | Negative | 3085298 - 3086410 | 40911.1 |
| crispr-associated endoribonuclease cas2 | SK85_02994 | P45956 | Negative | 3087118 - 3087411 | 11004.4 |
| crispr-associated endonuclease cas1 | SK85_02995 | Q46896 | Negative | 3087408 - 3088331 | 33452.8 |
| crispr-associated protein cas6/cse3/case, subtype i-e | SK85_02996 | Not Available | Negative | 3088328 - 3088978 | 24752.6 |
| crispr-associated protein cas5/casd, subtype i-e | SK85_02997 | Q46898 | Negative | 3088960 - 3089706 | 28748.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





