Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain BIDMC112 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1283364 bp
Thymine Count
1281198 bp
Guanine Count
1324998 bp
Cytosine Count
1318883 bp
Genome Length
5208446 bp
Protein-coding Genes
4697 genes
Non-Coding Genes
378 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| formate hydrogenlyase subunit 3 | SK85_02958 | P16429 | Negative | 3053093 - 3054919 | 64071.1 |
| formate hydrogenlyase subunit 2 | SK85_02959 | P0AAK2 | Negative | 3054916 - 3055527 | 21874.4 |
| formate hydrogenlyase regulatory protein hyca | SK85_02960 | P0AEV5 | Negative | 3055652 - 3056113 | 17627.9 |
| protein hypa | SK85_02961 | P0A701 | Positive | 3056325 - 3056675 | 13168.9 |
| hydrogenase isoenzymes nickel incorporation protein hypb | SK85_02962 | P0AAN4 | Positive | 3056679 - 3057551 | 31566.8 |
| hydrogenase isoenzymes formation protein hypc | SK85_02963 | P0AAM5 | Positive | 3057542 - 3057814 | 9732.58 |
| hydrogenase isoenzymes formation protein hypd | SK85_02964 | P24192 | Positive | 3057814 - 3058935 | 41365.7 |
| hydrogenase isoenzymes formation protein hype | SK85_02965 | P24193 | Positive | 3058932 - 3059942 | 35094.6 |
| formate hydrogenlyase transcriptional activator | SK85_02966 | P19323 | Positive | 3060016 - 3062094 | 78472.5 |
| hypothetical protein | SK85_02967 | P25728 | Negative | 3062131 - 3062484 | 13941.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





