Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain BIDMC112 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1283364 bp
Thymine Count
1281198 bp
Guanine Count
1324998 bp
Cytosine Count
1318883 bp
Genome Length
5208446 bp
Protein-coding Genes
4697 genes
Non-Coding Genes
378 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Endodeoxyribonuclease | SK85_01792 | Q47138 | Positive | 1817869 - 1820340 | 92787.6 |
| Bacteriophage excisionase | SK85_01793 | Not Available | Positive | 1820428 - 1820664 | 9183.07 |
| Putative integrase | SK85_01794 | P76168 | Positive | 1820699 - 1821979 | 48422.4 |
| Attr | Not Available | Not Available | Positive | 1822123 - 1822134 | Not Available |
| Zinc-containing alcohol dehydrogenase superfamily protein | SK85_01795 | P38105 | Negative | 1822167 - 1823186 | 36566.2 |
| starvation-sensing protein rspa | SK85_01796 | P38104 | Negative | 1823198 - 1824412 | 45985.0 |
| inner membrane protein | SK85_01797 | A7ZM41 | Negative | 1824618 - 1824944 | 11920.2 |
| Isrso10-transposase orfa protein | SK85_01798 | Not Available | Positive | 1825106 - 1825471 | 13452.4 |
| Is2 transposase tnpb | SK85_01799 | Not Available | Positive | 1825429 - 1826334 | 34400.0 |
| Attl | Not Available | Not Available | Positive | 2958294 - 2958305 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





